PEAKS Blog

The PEAKS development team has developed a solution to address MultiNotch MS3 Quantitation, currently in use by Proteome Sciences for biomarker discovery. MS3 provides more accurate quantificatio...

http://peaksblog.bioinfor.com/2015/10/multinotch-ms3-quantitation-solution.html

Earlier this year Methods published an article entitled Using Hydroxyl Radical Footprinting to Explore the Free Energy Landscape of Protein Folding . The article provides guidelines to ensure be...

http://peaksblog.bioinfor.com/2015/08/new-methods-of-peptide-footprinting.html

The PEAKS Training Workshop is coming to Stanford University (Stanford, California) on August 24-25. The Training Workshop provides a full hands-on experience with PEAKS 7.5 for both new and ex...

http://peaksblog.bioinfor.com/2015/07/peaks-training-workshop-san-francisco.html

We are excited to announce the release of PEAKS Studio 7.5. There are many new features in this release that expand the capabilities for our users. Just to name a few favourites, consider: PEAKS ...

http://peaksblog.bioinfor.com/2015/06/peaks-studio-75.html

The expanding popularity of PEAKS made for another exciting ASMS annual conference. During the PEAKS Meeting on Sunday, BSI gave an early glimpse into a future version of PEAKS Studio. Guest spea...

http://peaksblog.bioinfor.com/2015/06/asms-2015.html

The purpose of this year’s ABRF iPRG study was to evaluate different data analysis methods for relative protein-level quantification in label-free proteomics. In conclusion of the study, PEAKS...

http://peaksblog.bioinfor.com/2015/04/abrf-iprg-2015_15.html

Come by and visit PEAKS at this year's DGPF: Proteomic Forum (booth 19). The conference will be taking place March 22-25 at the Technical University Berlin (Germany). In addition, PEAKS will ...

http://peaksblog.bioinfor.com/2015/03/peaks-at-dgpf-proteomic-forum-2015.html

Stop by Booth 11 to visit PEAKS at the 11th annual US HUPO Conference. This year’s conference, located in Tempe, AZ, will span three days and include the research poster “Quantitative Analysi...

http://peaksblog.bioinfor.com/2015/03/peaks-at-us-hupo-2015.html

Analysis of histone modifications with PEAKS 7 The complex nature of histone modification patterns has posed as a challenge for bioinformatics analysis over the years. Yuan et al. conducted a...

http://peaksblog.bioinfor.com/2014/10/analysis-of-histone-modifications-with.html

PEAKS will be in Paris, France hosting both a training course and a workshop starting this September. A two-day PEAKS training course and a one-day workshop will be held at the Hotel Paris Bast...

http://peaksblog.bioinfor.com/2014/07/peaks-training-and-workshop-september-1.html

On the weekend of June 7th and 8th Bioinformatics Solutions Inc, makers of PEAKS software, was happy to sponsor one of its team members Dan Maloney in the Ontario Ride to Conquer Cancer. It was a...

http://peaksblog.bioinfor.com/2014/06/bsi-joins-battle-to-end-cancer-in-our.html

The PEAKS team will host a two-day workshop at Hilton Boston Back Bay Hotel in Boston. The early bird registration is open until May 31. You can register the workshop here .

http://peaksblog.bioinfor.com/2014/05/peaks-two-day-workshop-june-24-25-2014.html

It is the time of the year again to get prepared for the ASMS conference. We are happy to announce that the 8TH ANNUAL PEAKS USER MEETING will take place on JUNE 15, 2014, co-located with ASMS. ...

http://peaksblog.bioinfor.com/2014/05/annual-peaks-user-meeting-co-located.html

While laying down the foundation of the next major upgrade, we are also improving the current version. Just a few weeks ago, the PEAKS team has released a new build of PEAKS 7 to address some iss...

http://peaksblog.bioinfor.com/2014/04/peaks-7-patch-release.html

Recently some users reported an graphics issue when using PEAKS over Windows remote desktop connection. PEAKS GUI is not drawn correctly on the screen. We have observed the same issue in th...

http://peaksblog.bioinfor.com/2014/03/using-peaks-via-windows-remote-desktop.html

One of the issues in previous version of PEAKS is the difficulty on creating large, multiple sample projects. Users have to make hundreds of mouse clicks to create a project with hundreds of samp...

http://peaksblog.bioinfor.com/2014/02/create-complex-projects-with-ease-in.html

I wrote a post in early 2013 here to help users to run PEAKS as a Viewer on Mac OS or Linux. Similar procedure applies to PEAKS 7 as well. Many thanks to user ceinwyn that brought the issue to m...

http://peaksblog.bioinfor.com/2014/01/peaks-7-viewer-in-mac-os-x-mavericks.html

PEAKS supports de novo sequencing using spectral pairs or triplets that are generated using different fragmentations. This is a feature introduced in PEAKS 7. Here is the poster that briefly desc...

http://peaksblog.bioinfor.com/2014/01/de-novo-sequencing-using-spectral-pairs.html

2013 will come to the end in a few days. It's been a great year for us, the PEAKS team, at BSI and we want to take this opportunity to wish everyone a Merry Christmas and a Happy New Year!

http://peaksblog.bioinfor.com/2013/12/merry-christmas-and-happy-new-year.html

PEAKS 7 is released with a re-engineered LCMS view. Users may use this integrated and interactive view to navigate and dig into the data and result easily. In this post, I am going to talk about ...

http://peaksblog.bioinfor.com/2013/12/navigate-through-your-lcms-data-in-peaks.html

New mass spectrometry instruments come out every year with higher resolution and/or scan rate. This causes an increasing amount of data generated per hour. While the accuracy and sensitivity of t...

http://peaksblog.bioinfor.com/2013/12/boost-your-analysis-speed-with-peaks-7.html

We are happy to announce the release of PEAKS 7. The focus of this release is de novo sequencing improvements and a new label free quantification algorithm. The software is available for downloa...

http://peaksblog.bioinfor.com/2013/11/peaks-7-released.html

The PEAKS team was extremely busy in the past several weeks and finally today we are able to put PEAKS 7 beta in our invited testers' hands. The biggest new feature in PEAKS 7 is the new LABEL ...

http://peaksblog.bioinfor.com/2013/10/peaks-7-beta-starts-today.html

PEAKS de novo sequencing not only produces accurate de novo sequences from the spectrum, it also provides confidence score at amino acid level. In the de novo table, when you hover the mouse cu...

http://peaksblog.bioinfor.com/2013/10/local-confidence-score-and-de-novo-tags.html

The PEAKS team is getting ready to attend the HUPO 12th Annual World Congress . The conference will start on September 14th. This year's theme is "THE EVOLUTION OF TECHNOLOGY IN PROTEOMICS". W...

http://peaksblog.bioinfor.com/2013/09/peaks-at-hupo-2013-yokohama-japan.html