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Prospecting for Proposals for GSoC 2024
The Open Genome Informatics group and GMOD has submitted an application for Google Summer of Code (GSoC) this year, and we are soliciting project ideas from people and groups involved in the...
http://gmod.org/wiki/News/Prospecting_for_Proposals_for_GSoC_2024
JBrowse2 v1.1.0 Released
CONTENTS 1 We're pleased to announce a new release of JBrowse Web! 1.1 Changed callbacks language from JavaScript to Jexl 1.2 Fetch intron and upstream/downstream sequences 1.3 Interactive d...
Prospecting for Proposals for GSoC 2021
The Genome Informatics group and GMOD will be submitting an application for Google Summer of Code (GSoC) this year, and we are soliciting project ideas from people and groups involved in the...
http://gmod.org/wiki/News/Prospecting_for_Proposals_for_GSoC_2021
Codefest 2020
Handlery Hotel in the Balboa room (down the street from the Town and Country Hotel) San Diego, California January 9-10, 2020 Immediately before Plant and Animal Genome XXVIII (PAG 2020)...
Tripal 3.5 Released
This Tripal release includes major performance improvements including an improved and blazing fast GFF3 loader. Follow standard Drupal updating procedures to update. Changes in this version: Per...
JBrowse 2 release
We are pleased to announce the first public release of JBrowse 2 ! JBrowse 2 is the successor to JBrowse, but is a completely new application written with modern web standards and framew...
Prospecting for Proposals for GSoC 2020
The Genome Informatics group and GMOD will be submitting an application for Google Summer of Code (GSoC) this year, and we are soliciting project ideas from people and groups involved in the...
http://gmod.org/wiki/News/Prospecting_for_Proposals_for_GSoC_2020
Call for PAG Abstracts
CALL FOR PAG ABSTRACTS Time is short! If you want to attend PAG and would like to present on a topic that would be of interest to the GMOD community, please send an abstract or at least a des...
New GMOD Server
GMOD.ORG HAS A NEW HOME Due to a old server being retired, gmod.org has a new home. In the course of migrating the server, we also had to update the version of MediaWiki that is powering the sit...
GMOD-JBrowse 2016 Survey
Hello Genome Informaticians, The following survey is aimed at users (and potential users) of GMOD genome databases, especially the JBrowse genome browser. It will directly inform the priorities...
GCC2016
THE 2016 GALAXY COMMUNITY CONFERENCE (GCC2016) WILL BE HELD JUNE 25-29, AT INDIANA UNIVERSITY IN BLOOMINGTON, INDIANA, UNITED STATES, IMMEDIATELY BEFORE THE JUNE 2016 GMOD MEETING , ALSO...
2016 GMOD Meeting
THE NEXT GMOD COMMUNITY MEETING WILL BE HELD AT INDIANA UNIVERSITY IN BLOOMINGTON, INDIANA, UNITED STATES, JUNE 30-JULY 1, DIRECTLY AFTER THE 2016 GALAXY COMMUNITY CONFERENCE (GCC2016) . GMO...
Please Support EcoCyc
EcoCyc, the E. coli information resource and one of the resources offered by the Pathway Tools group, is in need of letters of support from the community after receiving a poor grant review...
June 2014 WebApollo Hackathon
Berkeley Bioinformatics Open-Source Projects (BBOP) invites you to join us this summer for a WEBAPOLLO HACKATHON at Lawrence Berkeley National Laboratory, California . WHEN: Monday, June 2 - 6...
Applications Open for GMOD Online Training
GMOD will be holding its first online training course for those interested in the set up and use of GMOD components. The course will be held from MONDAY 19TH MAY TO FRIDAY 23RD MAY 2014, and wi...
http://gmod.org/wiki/News/Applications_Open_for_GMOD_Online_Training
Canto Workshop at Biocuration 2014
GMOD will be running a workshop at Biocuration 2014 to demonstrate the use of Canto , on Wednesday 9th April in the afternoon. Canto is a literature curation tool that allows users to cre...
http://gmod.org/wiki/News/Canto_Workshop_at_Biocuration_2014
Tripal 2.0a released
The Tripal Development Team is pleased to announce an alpha release of Tripal 2.0 for Drupal 7. This release is expected to have bugs and there is some functionality still under development. Howe...
Precompiled Ontologies in Chado
Eric Rasche and the Center for Phage Technology at Texas A&M University are making Chado database dumps of precompiled ontologies publicly available to save other Chado users the time and hassl...
GCC2014 Registration is Open
WE ARE PLEASED TO ANNOUNCE THAT EARLY REGISTRATION AND TALK AND POSTER ABSTRACT SUBMISSION ARE NOW OPEN FOR THE 2014 GALAXY COMMUNITY CONFERENCE (GCC2014) . GCC2014 will be held at th...
GMOD Paper Cuts, Feb 10th, 2014
__NOFACTBOX__ GMOD PAPER CUTS IS A PERIODIC SELECTION OF CHOICE CUTS FROM THE SCIENTIFIC LITERATURE FEATURING INTERESTING, EXCITING, OR OTHERWISE EYE-CATCHING GMOD-RELATED WORK. If you would ...
Galaxy Australasia Workshop 2014
THE 1ST GALAXY AUSTRALASIA WORKSHOP 2014 (GAW 2014) WILL BE HELD IN MELBOURNE, AUSTRALIA ON 24 AND 25TH MARCH 2014. The Galaxy Australasia Workshop is a great opportunity to participate i...
GMOD Paper Cuts, Jan 24th, 2014
After a break for the festive season, PAG XXII , and the GMOD community meeting in San Diego , GMOD Paper Cuts is back with a selection of scholarly publications for your reading pleasure. __NO...
Postdoc Position in Computational and Plant Evolutionary Biology
The project involves construction and analysis of plant gene families and phylogenies, particularly focusing on the large legume family, and development of a corresponding database and on-line to...
http://gmod.org/wiki/News/Postdoc_Position_in_Computational_and_Plant_Evolutionary_Biology
Prospecting for Proposals for GSoC 2014
GMOD is participating in Google Summer of Code (GSoC) this year, and we are soliciting project ideas from people and groups involved in the GMOD project. GSoC is a global program run by Go...
http://gmod.org/wiki/News/Prospecting_for_Proposals_for_GSoC_2014
Biocuration 2014
7th International Biocuration Conference APRIL 6-9, 2014 -- TORONTO, CANADA Abstracts Due: February 10, 2014 Biocuration 2014 will provide a forum for trainees, biocurators, investigators,...
GMOD At PAG 2014
For those of you attending PAG XXII , we have made up a "cheatsheet" of GMOD-related content to check out . If you haven't yet signed up for the Jan 2014 GMOD Meeting , please do so ASAP! ...
Announcing GMOD Malaysia 2014
We are pleased to announce that GMOD will be running a three day training course in Kuala Lumpur, Malaysia, on 26-28 February 2014. The course will be run by experienced GMOD developers and tutor...
MAKER-P: an annotation pipeline for plants
The popular MAKER annotation pipeline has been extended and optimised to allow the annotation of plant species: > Sequencing diverse plant species of evolutionary, agricultural, and >�...
http://gmod.org/wiki/News/MAKER-P:_an_annotation_pipeline_for_plants
GMOD Paper Cuts, Dec 6th, 2013
__NOFACTBOX__ GMOD PAPER CUTS IS A PERIODIC SELECTION OF CHOICE CUTS FROM THE SCIENTIFIC LITERATURE FEATURING INTERESTING, EXCITING, OR OTHERWISE EYE-CATCHING GMOD-RELATED WORK. If you would ...
Canto, a GMOD tool for functional annotation
We are pleased to announce that Canto , the PomBase community curation tool, is now a GMOD component. Canto is an online tool that supports functional gene annotation by community research...
http://gmod.org/wiki/News/Canto,_a_GMOD_tool_for_functional_annotation
New WebApollo Release (2013/11/22)
There is a new release of WebApollo available from the WebApollo release website . The updated server setup instructions are available on the WebApollo Installation page, and the WebApollo user...
http://gmod.org/wiki/News/New_WebApollo_Release_(2013/11/22)
GMOD Paper Cuts, Nov 22nd, 2013
__NOFACTBOX__ GMOD PAPER CUTS IS A PERIODIC SELECTION OF CHOICE CUTS FROM THE SCIENTIFIC LITERATURE FEATURING INTERESTING, EXCITING, OR OTHERWISE EYE-CATCHING GMOD-RELATED WORK. If you would ...
GMOD Paper Cuts, Nov 15th, 2013
__NOFACTBOX__ GMOD PAPER CUTS IS A PERIODIC SELECTION OF CHOICE CUTS FROM THE SCIENTIFIC LITERATURE FEATURING INTERESTING, EXCITING, OR OTHERWISE EYE-CATCHING GMOD-RELATED WORK. If you would ...
GMOD Job At QMUL
There is a position as a sysadmin/computing officer open at the School of Biological & Chemical Sciences at Queen Mary University of London (QMUL), with duties including setting up Galaxy and ...
GMOD Paper Cuts, Nov 8th, 2013
__NOFACTBOX__ GMOD PAPER CUTS IS A PERIODIC SELECTION OF CHOICE CUTS FROM THE SCIENTIFIC LITERATURE FEATURING INTERESTING, EXCITING, OR OTHERWISE EYE-CATCHING GMOD-RELATED WORK. If you would ...
Open Position At dictyBase
DICTYBASE is hiring. We have an open position for a Bioinformatics Software Engineer at dictyBase . See the official posting for full details. Posted to the GMOD News on 2013/11/04
Tripal 1.1 Publication
The Tripal team have put out a publication on the 1.1 version of the software. TRIPAL V1.1: A STANDARDS-BASED TOOLKIT FOR CONSTRUCTION OF ONLINE GENETIC AND GENOMIC DATABASES. can be read fo...
San Diego 2014 Registration Open
Registration is now open for the upcoming GMOD community meeting , to be held at the Best Western Seven Seas, San Diego, CA , on January 16th and 17th 2014. REGISTER ONLINE AT EVENTBRITE NOW! ...
GCC2014: June 30 - July 2
The 2014 Galaxy Community Conference (GCC2013) will be held June 30 through July 2, at the Homewood Campus of Johns Hopkins University ], in Baltimore, Maryland , United States. Galaxy Co...
Get the Full ImpactStory
The GMOD wiki now includes ImpactStory altmetrics for publications cited in the page text. See the Publications page for an example of ImpactStory altmetrics. For those unfamiliar with the t...
GMOD 2014 San Diego: Save the Date
The next GMOD Community Meeting will be held in San Diego, CA, on January 16-17, directly after PAG XXII . In addition to the usual talks and updates, we plan to have a poster session, and a...
http://gmod.org/wiki/News/GMOD_2014_San_Diego:_Save_the_Date
Statistical Genomics PostDoc at PSU
Are you interested in genomics and do you have skills in Bioinformatics, Computational Biology and Statistics? The Makova lab in the Department of Biology at The Pennsylvania State University...
http://gmod.org/wiki/News/Statistical_Genomics_PostDoc_at_PSU
Support Your Friendly Local GMOD
The Generic Model Organism Database project is applying for a community resources for genomics grant from the NIH to continue the work that GMOD does, with a focus on JBrowse and Chado developme...
2013 Summer School Tutorials Available
The tutorials for the material taught at this year's GMOD summer school are now all available on the GMOD website. There are updated tutorials for several components, particularly those wher...
http://gmod.org/wiki/News/2013_Summer_School_Tutorials_Available
JBrowse 1.10.0 released
I am very pleased to announce the release of JBrowse 1.10.0, a major new JBrowse release with some big new features, and a *huge* number of smaller improvements! It can be downloaded from http:...
OpenID Account Creation Fixed
Update on July 11: Account creation using OpenID is currently disabled due to problems with the OpenID plugin. New wiki users wishing to create accounts should use the 'Log in / create account'...
GMOD's GSoC Going Great Guns!
GMOD is lucky enough to have a Google Summer of Code student working with us through the summer. FLAVIEN BOSSIAUX is a computer science student from the University of Nice, France, and he is wor...
GMOD in the Cloud 2.0 Released
from Scott Cain: I am pleased to announce that GMOD in the Cloud 2.0 has finally been released to the public. This Amazon Web Services (AWS) Amazon Machine Image (AMI) is public and can be c...
Last Call For Summer School Apps
The deadline to apply for the 2013 GMOD Summer School is rapidly approaching! Please submit your application by June 10th to ensure that you are in consideration for a place. The GMOD Summ...
GCC2013 Early Reg closes 24 May
Early registration for the 2013 Galaxy Community Conference (GCC2013) ends this Friday, 24 May. Early registration saves up to 75% off regular registration costs, and is downright affordabl...
New WebApollo Release
FROM ED LEE ON THE WEBAPOLLO MAILING LIST: We'd like to announce a new WebApollo release. GET THE NEWEST RELEASE -- Public demo -- Server setup instructions -- Updated user guide Su...