I can’t believe it has been a year since I posted in my open science notebook. It has mainly been because I have not done that much science really. Oh I have still been working on things here a...
MORNING I have been spending the last few weeks preparing for my iminent departure from CSIRO, as my contract ends today, which is why I haven’t posted here in awhile. It’s surprising how mu...
MORNING Worked on #LDA-metagenomics project. Did a bit more on testing assumption of the project here . AFTERNOON Worked a little on #PGHG project (PhyloGenetic Habitat Heterogeneity). Adde...
MORNING Worked on “modelling ecological processes using multiple biodiversity metrics” proposal. AFTERNOON Thought a little about whether it might be possible to write a static page gene...
MORNING Spent the morning writing up a short pre-proposal for a project I’d like to be involved in. Hoping this will become a full grant proposal in the near future. The prep-proposal follows...
http://rdinnager.github.io/notes/proposals/2014/07/24/pre-proposal
MORNING Spent some time this morning reading on machine learning. Discovered Metacademy as a potentially useful resource. Also found this old Coursera course run by Geoff Hinton from University...
MORNING Generated .rda file for huge (about 8GB csv) Return Time Distribution (RTDs ) data (for all kmers up to k = 6) for all international Barcode of Life COI insect sequences and put it into...
I just came across a potentially useful R package called mallet , which interfaces with MALLET : a Java based software package for machine learning text analysis. It can fit a lot of topic models...
Welcome to the open science notebook of Russell Dinnage. Here I will post notes about my day to day work in ecology. This is mostly for my own benefit, but also to share thoughts with anyone who ...